› 1l8z

Solution NMR

Solution structure of HMG box 5 in human upstream binding factor

Released:
DOI: 10.2210/pdb1l8z/pdb
PDB entry 1l8z coloured by chain, front view.
PDB entry 1l8z coloured by chain, side view.
PDB entry 1l8z coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor.
Yang W, Xu Y, Wu J, Zeng W, Shi Y
Biochemistry 42 1930-8 (2003)
PMID: 12590579

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148073 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleolar transcription factor 1 Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 10.89 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P17480 (Residues: 479-560; Coverage: 11%)
Gene names: UBF, UBF1, UBTF
Sequence domains: HMG (high mobility group) box 5
Structure domains: High mobility group box domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

5 review citations

Phase separation in biology; functional organization of a higher order.
Mitrea et al. (2016)
4 more

1 mention without citation

The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity.
Klass et al. (2003)