1s3s

X-ray diffraction
2.9Å resolution

Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-128729 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Transitional endoplasmic reticulum ATPase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 458 amino acids
Theoretical weight: 51.03 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q01853 (Residues: 1-458; Coverage: 57%)
Gene name: Vcp
Sequence domains:
Structure domains:
NSFL1 cofactor p47 Chains: G, H, I
Molecule details ›
Chains: G, H, I
Length: 127 amino acids
Theoretical weight: 13.78 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: O35987 (Residues: 244-370; Coverage: 34%)
Gene name: Nsfl1c
Sequence domains: UBX domain
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P65
Unit cell:
a: 157.719Å b: 157.719Å c: 243.195Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.248 0.248 0.294
Expression system: Escherichia coli