› 1c03

X-ray diffraction
2.3Å resolution

CRYSTAL STRUCTURE OF YPD1P (TRICLINIC FORM)

Released:
DOI: 10.2210/pdb1c03/pdb
PDB entry 1c03 coloured by chain, front view.
PDB entry 1c03 coloured by chain, side view.
PDB entry 1c03 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Insights into eukaryotic multistep phosphorelay signal transduction revealed by the crystal structure of Ypd1p from Saccharomyces cerevisiae.
Song HK, Lee JY, Lee MG, Moon J, Min K, Yang JK, Suh SW
J Mol Biol 293 753-61 (1999)
PMID: 10543964

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170492 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphorelay intermediate protein YPD1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 168 amino acids
Theoretical weight: 19.33 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07688 (Residues: 1-167; Coverage: 100%)
Gene names: D0790, YDL235C, YPD1
Sequence domains: Hpt domain
Structure domains: HPT domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: P1
Unit cell:
a: 66.343Å b: 66.48Å c: 66.491Å
α: 106.37° β: 106.66° γ: 115.33°
R-values:
R R work R free
0.206 0.206 0.248
Expression system: Escherichia coli

Quick links

Citations

8 review citations

Two-component signal transduction.
Stock et al. (2000)
7 more

7 mentions without citation

Quantitative proteomic analyses of influenza virus-infected cultured human lung cells.
Coombs et al. (2010)
6 more