› 1c8d

X-ray diffraction
3Å resolution

CANINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Released:
DOI: 10.2210/pdb1c8d/pdb
PDB entry 1c8d coloured by chain, front view.
PDB entry 1c8d coloured by chain, side view.
PDB entry 1c8d coloured by chain, top view.
Source organism: Canine parvovirus
Primary publication:
Host range and variability of calcium binding by surface loops in the capsids of canine and feline parvoviruses.
Simpson AA, Chandrasekar V, Hébert B, Sullivan GM, Rossmann MG, Parrish CR
J Mol Biol 300 597-610 (2000)
PMID: 10884355

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148071 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 584 amino acids
Theoretical weight: 64.78 KDa
Source organism: Canine parvovirus
UniProt:
  • Canonical: P17455 (Residues: 144-727; Coverage: 80%)
Sequence domains: Parvovirus coat protein VP2
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

1 bound ligand:
Ligand CA 1 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P1
Unit cell:
a: 267.563Å b: 268.446Å c: 274.328Å
α: 61.946° β: 62.616° γ: 60.186°
R-values:
R R work R free
0.214 not available not available

Quick links

Citations

8 review citations

The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses.
Parrish et al. (2005)
7 more

11 mentions without citation

Viral calciomics: interplays between Ca2+ and virus.
Zhou et al. (2009)
10 more