1ddl

X-ray diffraction
2.7Å resolution

DESMODIUM YELLOW MOTTLE TYMOVIRUS

Released:

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 300-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-131633 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct RNA molecules
Macromolecules (3 distinct):
Coat protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 188 amino acids
Theoretical weight: 20.01 KDa
Source organism: Desmodium yellow mottle virus
UniProt:
  • Canonical: O89511 (Residues: 1-188; Coverage: 100%)
Sequence domains: Tymovirus coat protein
Structure domains: Jelly Rolls
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') Chain: D
Molecule details ›
Chain: D
Length: 7 nucleotides
Theoretical weight: 2.1 KDa
Source organism: Desmodium yellow mottle virus
Expression system: Not provided
RNA (5'-R(P*UP*U)-3') Chain: E
Molecule details ›
Chain: E
Length: 2 nucleotides
Theoretical weight: 567 Da
Source organism: Desmodium yellow mottle virus
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: P4232
Unit cell:
a: 348.546Å b: 348.546Å c: 348.546Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.151 0.159
Expression system: Not provided