› 1dnm

X-ray diffraction
2.5Å resolution

CRYSTAL STRUCTURE AND SEQUENCE-DEPENDENT CONFORMATION OF THE A.G MIS-PAIRED OLIGONUCLEOTIDE D(CGCAAGCTGGCG)

Released:
DOI: 10.2210/pdb1dnm/pdb
PDB entry 1dnm coloured by chain, front view.
PDB entry 1dnm coloured by chain, side view.
PDB entry 1dnm coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG).
Webster GD, Sanderson MR, Skelly JV, Neidle S, Swann PF, Li BF, Tickle IJ
Proc Natl Acad Sci U S A 87 6693-7 (1990)
PMID: 2395870

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113698 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*CP*AP*AP*GP*CP*TP*GP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.69 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P212121
Unit cell:
a: 25.29Å b: 41.78Å c: 64.76Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 not available not available
Expression system: Not provided

Quick links

Citations

3 review citations

DNA structural forms.
Hartmann et al. (1996)
2 more

1 mention without citation

Recurrent RNA motifs as probes for studying RNA-protein interactions in the ribosome.
Gagnon et al. (2010)