› 1e7j

Solution NMR

HMG-D complexed to a bulge DNA

Released:
DOI: 10.2210/pdb1e7j/pdb
PDB entry 1e7j coloured by chain, ensemble of 10 models, front view.
PDB entry 1e7j coloured by chain, ensemble of 10 models, side view.
PDB entry 1e7j coloured by chain, ensemble of 10 models, top view.
Source organism: Drosophila melanogaster
Primary publication:
HMG-D complexed to a bulge DNA: an NMR model.
Cerdan R, Payet D, Yang JC, Travers AA, Neuhaus D
Protein Sci 10 504-18 (2001)
PMID: 11344319

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113720 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
High mobility group protein D Chain: A
Molecule details ›
Chain: A
Length: 74 amino acids
Theoretical weight: 8.5 KDa
Source organism: Drosophila melanogaster
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q05783 (Residues: 1-74; Coverage: 66%)
Gene names: CG17950, HmgD
Sequence domains: HMG (high mobility group) box
Structure domains: High mobility group box domain
DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3') Chain: B
Molecule details ›
Chain: B
Length: 14 nucleotides
Theoretical weight: 4.29 KDa
Source organism: Drosophila melanogaster
Expression system: Not provided
DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3') Chain: C
Molecule details ›
Chain: C
Length: 12 nucleotides
Theoretical weight: 3.66 KDa
Source organism: Drosophila melanogaster
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATED ANNEALING, MINIMIZATION
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

Quick links

Citations

1 review citation

An introduction to the mechanics of DNA.
Travers et al. (2004)
9 other articles

1 mention without citation

HMG-D complexed to a bulge DNA: an NMR model.
Cerdan et al. (2001)