› 1i11

Solution NMR

SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN, SOX-5 HMG BOX FROM MOUSE

Released:
DOI: 10.2210/pdb1i11/pdb
PDB entry 1i11 coloured by chain, ensemble of 30 models, front view.
PDB entry 1i11 coloured by chain, ensemble of 30 models, side view.
PDB entry 1i11 coloured by chain, ensemble of 30 models, top view.
Source organism: Mus musculus
Primary publication:
Solution structure and backbone dynamics of the DNA-binding domain of mouse Sox-5.
Cary PD, Read CM, Davis B, Driscoll PC, Crane-Robinson C
Protein Sci 10 83-98 (2001)
PMID: 11266597

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153000 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transcription factor SOX-5 Chain: A
Molecule details ›
Chain: A
Length: 81 amino acids
Theoretical weight: 9.83 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: P35710 (Residues: 554-632; Coverage: 10%)
Gene names: Sox-5, Sox5
Sequence domains: HMG (high mobility group) box
Structure domains: High mobility group box domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATING ANNEALING
Expression system: Escherichia coli

Quick links

Citations

3 review citations

Molecular basis for the genome engagement by Sox proteins.
Hou et al. (2017)
2 more

5 mentions without citation

Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics.
Narayana et al. (2009)
4 more