› 1k3v

X-ray diffraction
3.5Å resolution

Porcine Parvovirus Capsid

Released:
DOI: 10.2210/pdb1k3v/pdb
PDB entry 1k3v coloured by chain, front view.
PDB entry 1k3v coloured by chain, side view.
PDB entry 1k3v coloured by chain, top view.
Source organism: Porcine parvovirus
Primary publication:
The structure of porcine parvovirus: comparison with related viruses.
Simpson AA, Hébert B, Sullivan GM, Parrish CR, Zádori Z, Tijssen P, Rossmann MG
J Mol Biol 315 1189-98 (2002)
PMID: 11827486

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148402 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 579 amino acids
Theoretical weight: 64.41 KDa
Source organism: Porcine parvovirus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P18546 (Residues: 151-729; Coverage: 79%)
Sequence domains: Parvovirus coat protein VP2
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 14-BM-C
Spacegroup: P21212
Unit cell:
a: 442.49Å b: 443.05Å c: 251.31Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.394 0.286 0.283
Expression system: Spodoptera frugiperda

Quick links

Citations

11 review citations

Parvovirus host range, cell tropism and evolution.
Hueffer et al. (2003)
10 more

15 mentions without citation

Role of transglutaminase 2 in celiac disease pathogenesis.
Klöck et al. (2012)
14 more