1kgt

X-ray diffraction
2.3Å resolution

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo trimer (preferred)
PDBe Complex ID:
PDB-CPX-157438 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase Chain: A
Molecule details ›
Chain: A
Length: 274 amino acids
Theoretical weight: 29.92 KDa
Source organism: Mycobacterium tuberculosis variant bovis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P56220 (Residues: 1-274; Coverage: 100%)
Gene name: dapD
Sequence domains:
Structure domains:

Ligands and Environments


Cofactor: Ligand SCA 1 x SCA
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: R3
Unit cell:
a: 95.98Å b: 95.98Å c: 73.44Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.171 0.168 0.261
Expression system: Escherichia coli BL21(DE3)