1m57

X-ray diffraction
3Å resolution

Structure of cytochrome c oxidase from Rhodobacter sphaeroides (EQ(I-286) mutant))

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-152618 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Cytochrome c oxidase subunit 1 Chains: A, G
Molecule details ›
Chains: A, G
Length: 566 amino acids
Theoretical weight: 63.19 KDa
Source organism: Cereibacter sphaeroides
Expression system: Cereibacter sphaeroides
UniProt:
  • Canonical: P33517 (Residues: 1-566; Coverage: 100%)
Gene name: ctaD
Sequence domains: Cytochrome C and Quinol oxidase polypeptide I
Structure domains: Cytochrome c oxidase-like, subunit I domain
Cytochrome c oxidase subunit 2 Chains: B, H
Molecule details ›
Chains: B, H
Length: 264 amino acids
Theoretical weight: 29.39 KDa
Source organism: Cereibacter sphaeroides
Expression system: Cereibacter sphaeroides
UniProt:
  • Canonical: Q03736 (Residues: 26-289; Coverage: 95%)
Gene names: coxII, ctaB, ctaC
Sequence domains:
Structure domains:
cytochrome-c oxidase Chains: C, I
Molecule details ›
Chains: C, I
Length: 266 amino acids
Theoretical weight: 30.2 KDa
Source organism: Cereibacter sphaeroides
Expression system: Cereibacter sphaeroides
UniProt:
  • Canonical: P84153 (Residues: 1-266; Coverage: 100%)
Sequence domains: Cytochrome c oxidase subunit III
Structure domains:
Cytochrome c oxidase subunit IV bacterial aa3 type domain-containing protein Chains: D, J
Molecule details ›
Chains: D, J
Length: 51 amino acids
Theoretical weight: 5.41 KDa
Source organism: Cereibacter sphaeroides
Expression system: Cereibacter sphaeroides
UniProt:
  • Canonical: Q8KRK5 (Residues: 11-61; Coverage: 84%)
Gene name: coxIV
Sequence domains: Bacterial aa3 type cytochrome c oxidase subunit IV
Structure domains: Bacterial aa3 type cytochrome c oxidase subunit IV

Ligands and Environments


Cofactor: Ligand HEA 4 x HEA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: R3
Unit cell:
a: 340.72Å b: 340.72Å c: 89.76Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.293 0.293 0.329
Expression system: Cereibacter sphaeroides