› 1m6r

X-ray diffraction
1.54Å resolution

Crystal structure of rGd(CGCGCG) forming hexamer Z-DNA duplex with 5'-(rG) overhang

Released:
DOI: 10.2210/pdb1m6r/pdb
PDB entry 1m6r coloured by chain, front view.
PDB entry 1m6r coloured by chain, side view.
PDB entry 1m6r coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang.
Pan B, Sundaralingam M
Acta Crystallogr D Biol Crystallogr 59 433-7 (2003)
PMID: 12595699

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114171 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-R(*G)D(*CP*GP*CP*GP*CP*G)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 7 nucleotides
Theoretical weight: 2.14 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P212121
Unit cell:
a: 17.96Å b: 31.47Å c: 44.73Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.162 0.191
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Effect of Different Z-Inducers on the Stabilization of Z Portion in BZ-DNA Sequence: Correlation Between Experimental and Simulation Data.
Pietropaolo et al. (2015)