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Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate

Source organism: Escherichia virus T4
Biochemical function: metal ion binding
Biological process: not assigned
Cellular component: virus tail, fiber

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF14928
Domain description: Short tail fibre protein receptor-binding domain
Occurring in:
  1. Short tail fiber protein gp12
The deposited structure of PDB entry 1pdi contains 18 copies of Pfam domain PF14928 (Short tail fibre protein receptor-binding domain) in Short tail fiber protein gp12. Showing 1 copy in chain A.

PF07484
Domain description: Phage Tail Collar Domain
Occurring in:
  1. Short tail fiber protein gp12
The deposited structure of PDB entry 1pdi contains 18 copies of Pfam domain PF07484 (Phage Tail Collar Domain) in Short tail fiber protein gp12. Showing 1 copy in chain A.

PF09089
Domain description: Phage short tail fibre protein gp12, middle domain
Occurring in:
  1. Short tail fiber protein gp12
The deposited structure of PDB entry 1pdi contains 18 copies of Pfam domain PF09089 (Phage short tail fibre protein gp12, middle domain) in Short tail fiber protein gp12. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR027448
Domain description: Short tail fibre protein, C-terminal
Occurring in:
  1. Short tail fiber protein gp12
IPR044916
Domain description: Short tail fibre protein, C-terminal superfamily
Occurring in:
  1. Short tail fiber protein gp12
IPR011083
Domain description: Phage tail collar domain
Occurring in:
  1. Short tail fiber protein gp12
IPR037053
Domain description: Phage tail collar domain superfamily
Occurring in:
  1. Short tail fiber protein gp12
IPR015173
Domain description: Bacteriophage T4, Gp12
Occurring in:
  1. Short tail fiber protein gp12

Structure domain

SCOP SCOP annotation
103676
Class: Low resolution protein structures
Fold: Bacteriophage T4 3D cryo-EM reconstruction
Superfamily: Bacteriophage T4 3D cryo-EM reconstruction
Occurring in:
  1. Short tail fiber protein gp12
The deposited structure of PDB entry 1pdi contains 18 copies of SCOP domain 103676 (Bacteriophage T4 3D cryo-EM reconstruction) in Short tail fiber protein gp12. Showing 1 copy in chain A.

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