› 1pdi

Electron Microscopy
12Å resolution

Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate

Released:
DOI: 10.2210/pdb1pdi/pdb
PDB entry 1pdi coloured by chain, front view.
PDB entry 1pdi coloured by chain, side view.
PDB entry 1pdi coloured by chain, top view.
Source organism: Escherichia virus T4
Primary publication:
Three-dimensional structure of bacteriophage T4 baseplate.
Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Biol 10 688-93 (2003)
PMID: 12923574
Related structures: EMD-1048

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo octadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-145528 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Short tail fiber protein gp12 Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Length: 278 amino acids
Theoretical weight: 29.86 KDa
Source organism: Escherichia virus T4
UniProt:
  • Canonical: P10930 (Residues: 250-527; Coverage: 53%)
Gene name: 12
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-1048

Quick links

Citations

25 review citations

A view to a kill: the bacterial type VI secretion system.
Ho et al. (2014)
24 more

5 mentions without citation

The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5.
Kropinski et al. (2013)
4 more