› 1pdl

Electron Microscopy
12Å resolution

Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate

Released:
DOI: 10.2210/pdb1pdl/pdb
PDB entry 1pdl coloured by chain, front view.
PDB entry 1pdl coloured by chain, side view.
PDB entry 1pdl coloured by chain, top view.
Source organism: Escherichia virus T4
Primary publication:
Three-dimensional structure of bacteriophage T4 baseplate.
Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Biol 10 688-93 (2003)
PMID: 12923574
Related structures: EMD-1048

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147581 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pre-baseplate central spike protein Gp5 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 575 amino acids
Theoretical weight: 63.18 KDa
Source organism: Escherichia virus T4
UniProt:
  • Canonical: P16009 (Residues: 1-575; Coverage: 100%)
Gene name: 5
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-1048

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Citations

25 review citations

A view to a kill: the bacterial type VI secretion system.
Ho et al. (2014)
24 more