› 1pdm

Electron Microscopy
12Å resolution

Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate

Released:
DOI: 10.2210/pdb1pdm/pdb
PDB entry 1pdm coloured by chain, front view.
PDB entry 1pdm coloured by chain, side view.
PDB entry 1pdm coloured by chain, top view.
Source organism: Escherichia virus T4
Primary publication:
Three-dimensional structure of bacteriophage T4 baseplate.
Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Biol 10 688-93 (2003)
PMID: 12923574
Related structures: EMD-1048

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dodecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148487 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Baseplate wedge protein gp8 Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 334 amino acids
Theoretical weight: 38.04 KDa
Source organism: Escherichia virus T4
UniProt:
  • Canonical: P19062 (Residues: 1-334; Coverage: 100%)
Gene name: 8
Sequence domains: Bacteriophage T4, Gp8

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-1048

Quick links

Citations

25 review citations

A view to a kill: the bacterial type VI secretion system.
Ho et al. (2014)
24 more

1 mention without citation

TssA forms a gp6-like ring attached to the type VI secretion sheath.
Planamente et al. (2016)