› 1pdp

Electron Microscopy
12Å resolution

Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction

Released:
DOI: 10.2210/pdb1pdp/pdb
PDB entry 1pdp coloured by chain, front view.
PDB entry 1pdp coloured by chain, side view.
PDB entry 1pdp coloured by chain, top view.
Source organism: Escherichia virus T4
Primary publication:
Three-dimensional structure of bacteriophage T4 baseplate.
Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Biol 10 688-93 (2003)
PMID: 12923574
Related structures: EMD-1048

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo octadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-145519 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Baseplate protein gp9 Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Length: 288 amino acids
Theoretical weight: 31.02 KDa
Source organism: Escherichia virus T4
UniProt:
  • Canonical: P10927 (Residues: 1-288; Coverage: 100%)
Gene name: 9
Sequence domains: Bacteriophage T4 gp9/10-like protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-1048

Quick links

Citations

25 review citations

A view to a kill: the bacterial type VI secretion system.
Ho et al. (2014)
24 more