› 1s7d

X-ray diffraction
2.17Å resolution

Crystal structure of refined tetragonal crystal of YodA from Escherichia coli

Released:
DOI: 10.2210/pdb1s7d/pdb
PDB entry 1s7d coloured by chain, front view.
PDB entry 1s7d coloured by chain, side view.
PDB entry 1s7d coloured by chain, top view.
Source organism: Escherichia coli
Entry authors: Shin DH, Yokota H, Kim R, Kim SH, Berkeley Structural Genomics Center (BSGC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-160081 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Metal-binding protein ZinT Chain: A
Molecule details ›
Chain: A
Length: 216 amino acids
Theoretical weight: 24.8 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P76344 (Residues: 1-216; Coverage: 100%)
Gene names: JW1956, b1973, yodA, zinT
Sequence domains: ZinT (YodA) periplasmic lipocalin-like zinc-recruitment
Structure domains: Lipocalin

Ligands and Environments

1 bound ligand:
Ligand ZN 4 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.1
Spacegroup: P41212
Unit cell:
a: 55.009Å b: 55.009Å c: 153.785Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.21 0.255
Expression system: Escherichia coli

Quick links