1sl6

X-ray diffraction
2.25Å resolution

Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-190558 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
C-type lectin domain family 4 member M Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 184 amino acids
Theoretical weight: 21.4 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9H2X3 (Residues: 216-399; Coverage: 46%)
Gene names: CD209L, CD209L1, CD299, CLEC4M
Sequence domains: Lectin C-type domain
Structure domains: Mannose-Binding Protein A, subunit A

Ligands and Environments

Carbohydrate polymer : NEW Components: NDG, FUC, GAL
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P3221
Unit cell:
a: 153.75Å b: 153.75Å c: 128.702Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.219 0.219 0.256
Expression system: Escherichia coli