› 1sva

X-ray diffraction
3.1Å resolution

SIMIAN VIRUS 40

Released:
DOI: 10.2210/pdb1sva/pdb
PDB entry 1sva coloured by chain, front view.
PDB entry 1sva coloured by chain, side view.
PDB entry 1sva coloured by chain, top view.
Source organism: Macaca mulatta polyomavirus 1
Primary publication:
The structure of simian virus 40 refined at 3.1 A resolution.
Stehle T, Gamblin SJ, Yan Y, Harrison SC
Structure 4 165-82 (1996)
PMID: 8805523

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 360-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136554 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein VP1 Chains: 1, 2, 3, 4, 5, 6
Molecule details ›
Chains: 1, 2, 3, 4, 5, 6
Length: 361 amino acids
Theoretical weight: 39.82 KDa
Source organism: Macaca mulatta polyomavirus 1
UniProt:
  • Canonical: P03087 (Residues: 2-362; Coverage: 100%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: I23
Unit cell:
a: 558Å b: 558Å c: 558Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.257 0.257 0.268

Quick links

Citations

50 review citations

Virus entry: open sesame.
Marsh et al. (2006)
49 more

39 mentions without citation

Origins and evolution of viruses of eukaryotes: The ultimate modularity.
Koonin et al. (2015)
38 more