› 1ty8

X-ray diffraction
2.1Å resolution

Crystal structure of yeast ymx7, an ADP-ribose-1''-monophosphatase, complexed with ADP

Released:
DOI: 10.2210/pdb1ty8/pdb
PDB entry 1ty8 coloured by chain, front view.
PDB entry 1ty8 coloured by chain, side view.
PDB entry 1ty8 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Kumaran D, Swaminathan S, Burley SK, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Reaction catalysed: 
ADP-D-ribose 1''-phosphate + H(2)O = ADP-D-ribose + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo dimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170014 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable ADP-ribose 1''-phosphate phosphatase YML087W Chain: A
Molecule details ›
Chain: A
Length: 284 amino acids
Theoretical weight: 32.11 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q04299 (Residues: 1-284; Coverage: 100%)
Gene names: YM9582.12, YMR087W
Sequence domains: Macro-like domain
Structure domains: Leucine Aminopeptidase, subunit E, domain 1

Ligands and Environments

3 bound ligands:
Ligand NA 2 x NA
Ligand CL 1 x CL
Ligand ADP 1 x ADP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: C2
Unit cell:
a: 107.948Å b: 38.054Å c: 63.137Å
α: 90° β: 111.75° γ: 90°
R-values:
R R work R free
0.19 0.19 0.244
Expression system: Escherichia coli

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