› 1uha

X-ray diffraction
1.5Å resolution

Crystal Structure of Pokeweed Lectin-D2

Released:
DOI: 10.2210/pdb1uha/pdb
PDB entry 1uha coloured by chain, front view.
PDB entry 1uha coloured by chain, side view.
PDB entry 1uha coloured by chain, top view.
Source organism: Phytolacca americana
Primary publication:
Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Fujii T, Hayashida M, Hamasu M, Ishiguro M, Hata Y
Acta Crystallogr D Biol Crystallogr 60 665-73 (2004)
PMID: 15039554

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-160744 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lectin-D2 Chain: A
Molecule details ›
Chain: A
Length: 82 amino acids
Theoretical weight: 9.11 KDa
Source organism: Phytolacca americana
UniProt:
  • Canonical: P83790 (Residues: 1-82; Coverage: 100%)
Sequence domains: Chitin recognition protein
Structure domains: Endochitinase-like

Ligands and Environments

1 bound ligand:
Ligand CA 1 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-18B
Spacegroup: P21
Unit cell:
a: 23.24Å b: 56.95Å c: 29.62Å
α: 90° β: 109.3° γ: 90°
R-values:
R R work R free
0.179 0.176 0.207

Quick links

Citations

4 citation in other articles

Poke weed mitogen requires Toll-like receptor ligands for proliferative activity in human and murine B lymphocytes.
Bekeredjian-Ding et al. (2012)
3 more

5 mentions without citation

Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis.
Opron et al. (2014)
4 more