› 1w9z

X-ray diffraction
2.56Å resolution

Structure of Bannavirus VP9

Released:
DOI: 10.2210/pdb1w9z/pdb
PDB entry 1w9z coloured by chain, front view.
PDB entry 1w9z coloured by chain, side view.
PDB entry 1w9z coloured by chain, top view.
Source organism: Banna virus
Primary publication:
The structure and function of the outer coat protein VP9 of Banna virus.
Mohd Jaafar F, Attoui H, Bahar MW, Siebold C, Sutton G, Mertens PP, De Micco P, Stuart DI, Grimes JM, De Lamballerie X
Structure 13 17-28 (2005)
PMID: 15642258

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195521 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VP9 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 283 amino acids
Theoretical weight: 30.54 KDa
Source organism: Banna virus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9YWN5 (Residues: 1-283; Coverage: 100%)
Sequence domains: Reoviridae VP9
Structure domains: Reoviridae VP9, N-terminal domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: C2
Unit cell:
a: 126.386Å b: 73.739Å c: 95.722Å
α: 90° β: 97.19° γ: 90°
R-values:
R R work R free
0.186 0.183 0.248
Expression system: Escherichia coli BL21

Quick links

Citations

3 review citations

What does structure tell us about virus evolution?
Bamford et al. (2005)
2 more

2 mentions without citation

A Two-Layer SVM Ensemble-Classifier to Predict Interface Residue Pairs of Protein Trimers.
Lyu et al. (2020)
1 more