› 1woe

X-ray diffraction
1.5Å resolution

X-ray structure of a Z-DNA hexamer d(CGCGCG)

Released:
DOI: 10.2210/pdb1woe/pdb
PDB entry 1woe coloured by chain, front view.
PDB entry 1woe coloured by chain, side view.
PDB entry 1woe coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Chatake T, Tanaka I, Umino H, Arai S, Niimura N
Acta Crystallogr D Biol Crystallogr 61 1088-98 (2005)
PMID: 16041074

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114767 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
Z-DNA hexamer Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand SPM 1 x SPM
Ligand DOD 57 x DOD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MACSCIENCE
Spacegroup: P212121
Unit cell:
a: 18.46Å b: 30.76Å c: 43.18Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.176 0.206
Expression system: Not provided

Quick links

Citations

8 review citations

Neutron crystallography: opportunities, challenges, and limitations.
Blakeley et al. (2008)
7 more

13 mentions without citation

Current Approaches for Investigating and Predicting Cytochrome P450 3A4-Ligand Interactions.
Sevrioukova et al. (2015)
12 more