› 1xv6

Solution NMR

The solution structure of 2',5'-linked 3'-O-(2-methoxyethyl)-RNA hairpin

Released:
DOI: 10.2210/pdb1xv6/pdb
PDB entry 1xv6 coloured by chain, ensemble of 30 models, front view.
PDB entry 1xv6 coloured by chain, ensemble of 30 models, side view.
PDB entry 1xv6 coloured by chain, ensemble of 30 models, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex.
Plevnik M, Gdaniec Z, Plavec J
Nucleic Acids Res 33 1749-59 (2005)
PMID: 15788747

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196246 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*(C2L)P*(G2L)P*(C2L)P*(G2L)P*(A2L)P*(A2L)P*(U2L)P*(U2L)P*(C2L)P*(G2L)P*(C2L)P*(G2L))-2' Chain: A
Molecule details ›
Chain: A
Length: 12 nucleotides
Theoretical weight: 4.61 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
4 modified residues:
Ligand C2L 4 x C2L
Ligand G2L 4 x G2L
Ligand A2L 2 x A2L
Ligand U2L 2 x U2L

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing, energy minimization
Expression system: Not provided

Quick links

Citations

5 citation in other articles

The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion.
Martín-Pintado et al. (2012)
4 more

1 mention without citation

Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplex.
Plevnik et al. (2005)