› 1y9e

X-ray diffraction
2.8Å resolution

Crystal structure of Bacillus subtilis protein yhfP with NAD bound

Released:
DOI: 10.2210/pdb1y9e/pdb
PDB entry 1y9e coloured by chain, front view.
PDB entry 1y9e coloured by chain, side view.
PDB entry 1y9e coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Min T, Gorman J, Shapiro L, Burley SK, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126600 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative quinone oxidoreductase YhfP Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 330 amino acids
Theoretical weight: 34.98 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O07615 (Residues: 1-330; Coverage: 100%)
Gene names: BSU10320, yhfP
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand NAD 6 x NAD
1 modified residue:
Ligand MSE 24 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P212121
Unit cell:
a: 103.271Å b: 136.922Å c: 167.135Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.277 0.227 0.233
Expression system: Escherichia coli BL21(DE3)

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