› 1zce

X-ray diffraction
1.3Å resolution

X-Ray Crystal Structure of Protein Atu2648 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR33.

Released:
DOI: 10.2210/pdb1zce/pdb
PDB entry 1zce coloured by chain, front view.
PDB entry 1zce coloured by chain, side view.
PDB entry 1zce coloured by chain, top view.
Source organism: Agrobacterium fabrum str. C58
Primary publication:
Structural genomics reveals EVE as a new ASCH/PUA-related domain.
Bertonati C, Punta M, Fischer M, Yachdav G, Forouhar F, Zhou W, Kuzin AP, Seetharaman J, Abashidze M, Ramelot TA, Kennedy MA, Cort JR, Belachew A, Hunt JF, Tong L, Montelione GT, Rost B
Proteins 75 760-73 (2009)
PMID: 19191354

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108873 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
EVE domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 155 amino acids
Theoretical weight: 18.08 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli
UniProt:
  • Canonical: A9CHJ4 (Residues: 1-147; Coverage: 100%)
Gene name: Atu2648
Sequence domains: EVE domain
Structure domains: ph1033 like domains

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P21
Unit cell:
a: 40.642Å b: 42.791Å c: 43.684Å
α: 90° β: 113.67° γ: 90°
R-values:
R R work R free
0.197 0.195 0.211
Expression system: Escherichia coli

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Citations

4 review citations

Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification.
Iyer et al. (2016)
3 more

7 mentions without citation

The YTH domain is a novel RNA binding domain.
Zhang et al. (2010)
6 more