1zms

X-ray diffraction
2.8Å resolution

LMP1 Protein binds to TRAF3 as a structural CD40

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero dimer (preferred)
hetero hexamer
PDBe Complex ID:
PDB-CPX-146494 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
TNF receptor-associated factor 3 Chain: A
Molecule details ›
Chain: A
Length: 192 amino acids
Theoretical weight: 21.83 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q13114 (Residues: 377-568; Coverage: 34%)
Gene names: CAP-1, CRAF1, TRAF3, TRAFAMN
Sequence domains: TRAF/meprin, MATH domain
Structure domains: Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A
Latent membrane protein 1 Chain: B
Molecule details ›
Chain: B
Length: 8 amino acids
Theoretical weight: 912 Da
Source organism: Human herpesvirus 4 strain RAJI
Expression system: Not provided
UniProt:
  • Canonical: P13198 (Residues: 203-210; Coverage: 2%)
Gene names: BNLF1, LMP1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-3
Spacegroup: P321
Unit cell:
a: 83.67Å b: 83.67Å c: 77.96Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.206 0.206 0.255
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided