› 2db8

Solution NMR

Solution structures of the fn3 domain of human Tripartite motif protein 9

Released:
DOI: 10.2210/pdb2db8/pdb
PDB entry 2db8 coloured by chain, ensemble of 20 models, front view.
PDB entry 2db8 coloured by chain, ensemble of 20 models, side view.
PDB entry 2db8 coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry authors: Sato M, Koshiba S, Inoue M, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189883 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase TRIM9 Chain: A
Molecule details ›
Chain: A
Length: 110 amino acids
Theoretical weight: 11.55 KDa
Source organism: Homo sapiens
Expression system: Cell free synthesis
UniProt:
  • Canonical: Q9C026 (Residues: 439-534; Coverage: 14%)
Gene names: KIAA0282, RNF91, TRIM9
Sequence domains: Fibronectin type III domain
Structure domains: Immunoglobulins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Cell free synthesis

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