› 2de0

X-ray diffraction
2.61Å resolution

Crystal structure of human alpha 1,6-fucosyltransferase, FUT8

Released:
DOI: 10.2210/pdb2de0/pdb
PDB entry 2de0 coloured by chain, front view.
PDB entry 2de0 coloured by chain, side view.
PDB entry 2de0 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of mammalian alpha1,6-fucosyltransferase, FUT8.
Ihara H, Ikeda Y, Toma S, Wang X, Suzuki T, Gu J, Miyoshi E, Tsukihara T, Honke K, Matsumoto A, Nakagawa A, Taniguchi N
Glycobiology 17 455-66 (2007)
PMID: 17172260

Function and Biology Details

Reaction catalysed: 
GDP-beta-L-fucose + N(4)-(N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-(N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6))-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-N-acetyl-beta-D-glucosaminyl)asparagine = GDP + N(4)-(N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->3)-(N-acetyl-beta-D-glucosaminyl-(1->2)-alpha-D-mannosyl-(1->6))-beta-D-mannosyl-(1->4)-N-acetyl-beta-D-glucosaminyl-(1->4)-(alpha-L-fucosyl-(1->6))-N-acetyl-beta-D-glucosaminyl)asparagine
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189827 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alpha-(1,6)-fucosyltransferase Chain: X
Molecule details ›
Chain: X
Length: 526 amino acids
Theoretical weight: 60.27 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9BYC5 (Residues: 68-575; Coverage: 88%)
Gene name: FUT8
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P6522
Unit cell:
a: 90.03Å b: 90.03Å c: 380.7Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.223 0.22 0.283
Expression system: Spodoptera frugiperda

Quick links

Citations

16 review citations

Glycosyltransferases: structures, functions, and mechanisms.
Lairson et al. (2008)
15 more

9 mentions without citation

Glycosyltransferase complexes in eukaryotes: long-known, prevalent but still unrecognized.
Kellokumpu et al. (2016)
8 more