› 2dvs

X-ray diffraction
2.04Å resolution

Crystal structure analysis of the N-terminal bromodomain of human BRD2 complexed with acetylated histone H4 peptide

Released:
DOI: 10.2210/pdb2dvs/pdb
PDB entry 2dvs coloured by chain, front view.
PDB entry 2dvs coloured by chain, side view.
PDB entry 2dvs coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structural basis for acetylated histone H4 recognition by the human BRD2 bromodomain.
Umehara T, Nakamura Y, Jang MK, Nakano K, Tanaka A, Ozato K, Padmanabhan B, Yokoyama S
J Biol Chem 285 7610-8 (2010)
PMID: 20048151

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
hetero tetramer (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-150469 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Bromodomain-containing protein 2 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 122 amino acids
Theoretical weight: 14.8 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P25440 (Residues: 73-194; Coverage: 15%)
Gene names: BRD2, KIAA9001, RING3
Sequence domains: Bromodomain
Structure domains: Bromodomain-like
histone H4 Chains: P, Q
Molecule details ›
Chains: P, Q
Length: 12 amino acids
Theoretical weight: 1.35 KDa
Source organism: Homo sapiens
Expression system: Not provided

Ligands and Environments

No bound ligands
2 modified residues:
Ligand MSE 21 x MSE
Ligand ALY 2 x ALY

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44B2
Spacegroup: C2
Unit cell:
a: 114.149Å b: 55.248Å c: 67.364Å
α: 90° β: 94.12° γ: 90°
R-values:
R R work R free
0.194 0.192 0.231
Expression systems:
  • Spodoptera frugiperda
  • Not provided

Quick links

Citations

18 review citations

BET domain co-regulators in obesity, inflammation and cancer.
Belkina et al. (2012)
17 more

1 mention without citation

Structural basis for acetylated histone H4 recognition by the human BRD2 bromodomain.
Umehara et al. (2010)