› 2hdz

X-ray diffraction
2Å resolution

Crystal Structure Analysis of the UBF HMG box5

Released:
DOI: 10.2210/pdb2hdz/pdb
PDB entry 2hdz coloured by chain, front view.
PDB entry 2hdz coloured by chain, side view.
PDB entry 2hdz coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure of human upstream binding factor HMG box 5 and site for binding of the cell-cycle regulatory factor TAF1.
Rong H, Li Y, Shi X, Zhang X, Gao Y, Dai H, Teng M, Niu L, Liu Q, Hao Q
Acta Crystallogr D Biol Crystallogr 63 730-7 (2007)
PMID: 17505112

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148073 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleolar transcription factor 1 Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 10.89 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P17480 (Residues: 479-560; Coverage: 11%)
Gene names: UBF, UBF1, UBTF
Sequence domains: HMG (high mobility group) box 5
Structure domains: High mobility group box domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE A1, BSRF BEAMLINE 3W1A
Spacegroup: P65
Unit cell:
a: 60.812Å b: 60.812Å c: 63.158Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.22 0.217 0.267
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries.
Vannini A. (2013)
1 more

6 mentions without citation

Macromolecular ab initio phasing enforcing secondary and tertiary structure.
Millán et al. (2015)
5 more