› 2l00

Solution NMR

Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin

Released:
DOI: 10.2210/pdb2l00/pdb
PDB entry 2l00 coloured by chain, ensemble of 10 models, front view.
PDB entry 2l00 coloured by chain, ensemble of 10 models, side view.
PDB entry 2l00 coloured by chain, ensemble of 10 models, top view.
Source organisms:
Entry authors: Garner TP, Long JE, Searle MS, Layfield R

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110196 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
AN1-type zinc finger protein 5 Chain: A
Molecule details ›
Chain: A
Length: 62 amino acids
Theoretical weight: 6.54 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: B5DF11 (Residues: 1-60; Coverage: 28%)
Gene names: Zfand5, Zfp216, Znf216
Sequence domains: A20-like zinc finger
Ubiquitin Chain: B
Molecule details ›
Chain: B
Length: 76 amino acids
Theoretical weight: 8.57 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P0CG63 (Residues: 305-380; Coverage: 20%)
Gene names: SCD2, UBI4, YLL039C
Sequence domains: Ubiquitin family
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: Rigid Body Docking, molecular dynamics
Expression system: Escherichia coli

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