› 2pa2

X-ray diffraction
2.5Å resolution

Crystal structure of human Ribosomal protein L10 core domain

Released:
DOI: 10.2210/pdb2pa2/pdb
PDB entry 2pa2 coloured by chain, front view.
PDB entry 2pa2 coloured by chain, side view.
PDB entry 2pa2 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold.
Nishimura M, Kaminishi T, Takemoto C, Kawazoe M, Yoshida T, Tanaka A, Sugano S, Shirouzu M, Ohkubo T, Yokoyama S, Kobayashi Y
J Mol Biol 377 421-30 (2008)
PMID: 18258260

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151044 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Large ribosomal subunit protein uL16 Chains: A, B
Molecule details ›
Chains: A, B
Length: 151 amino acids
Theoretical weight: 17.2 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P27635 (Residues: 34-182; Coverage: 70%)
Gene names: DXS648E, QM, RPL10
Sequence domains: Ribosomal protein L16p/L10e
Structure domains: Ribosomal protein L10e/L16

Ligands and Environments

1 bound ligand:
Ligand K 2 x K
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P3121
Unit cell:
a: 52.724Å b: 52.724Å c: 185.489Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.24 0.24 0.264
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 citation in other articles

New evidence for differential roles of l10 ribosomal proteins from Arabidopsis.
Falcone Ferreyra et al. (2013)
3 more

3 mentions without citation

Structure and interactions of the Bacillus subtilis sporulation inhibitor of DNA replication, SirA, with domain I of DnaA.
Jameson et al. (2014)
2 more