› 2yrg

Solution NMR

Solution structure of the B-box domain from tripartite motif-containing protein 5

Released:
DOI: 10.2210/pdb2yrg/pdb
PDB entry 2yrg coloured by chain, ensemble of 20 models, front view.
PDB entry 2yrg coloured by chain, ensemble of 20 models, side view.
PDB entry 2yrg coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry authors: Qin XR, Hayahsi F, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189886 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tripartite motif-containing protein 5 Chain: A
Molecule details ›
Chain: A
Length: 59 amino acids
Theoretical weight: 6.35 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9C035 (Residues: 86-131; Coverage: 9%)
Gene names: RNF88, TRIM5
Sequence domains: B-box zinc finger

Ligands and Environments

1 bound ligand:
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Not provided

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