› 2awh

X-ray diffraction
2Å resolution

Human Nuclear Receptor-Ligand Complex 1

Released:
DOI: 10.2210/pdb2awh/pdb
PDB entry 2awh coloured by chain, front view.
PDB entry 2awh coloured by chain, side view.
PDB entry 2awh coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Recombinant human PPAR-beta/delta ligand-binding domain is locked in an activated conformation by endogenous fatty acids.
Fyffe SA, Alphey MS, Buetow L, Smith TK, Ferguson MA, Sørensen MD, Björkling F, Hunter WN
J Mol Biol 356 1005-13 (2006)
PMID: 16405912

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169864 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peroxisome proliferator-activated receptor delta Chains: A, B
Molecule details ›
Chains: A, B
Length: 268 amino acids
Theoretical weight: 30.68 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q03181 (Residues: 174-441; Coverage: 61%)
Gene names: NR1C2, PPARB, PPARD
Sequence domains: Ligand-binding domain of nuclear hormone receptor
Structure domains: Retinoid X Receptor

Ligands and Environments

2 bound ligands:
Ligand B7G 2 x B7G
Ligand VCA 2 x VCA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P21
Unit cell:
a: 37.22Å b: 96.717Å c: 92.304Å
α: 90° β: 89.96° γ: 90°
R-values:
R R work R free
0.215 0.212 0.259
Expression system: Escherichia coli

Quick links

Citations

11 review citations

Long-chain polyunsaturated fatty acids: selected mechanisms of action on bone.
Kruger et al. (2010)
10 more

3 mentions without citation

Limitations and lessons in the use of X-ray structural information in drug design.
Davis et al. (2008)
2 more