› 2cq2

Solution NMR

solution structure of RNA binding domain in Hypothetical protein LOC91801

Released:
DOI: 10.2210/pdb2cq2/pdb
PDB entry 2cq2 coloured by chain, ensemble of 20 models, front view.
PDB entry 2cq2 coloured by chain, ensemble of 20 models, side view.
PDB entry 2cq2 coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry authors: Tsuda K, Muto Y, Inoue M, Kigawa T, Terada T, Shirouzu M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
S-adenosyl-L-methionine + carboxymethyluridine(34) in tRNA = S-adenosyl-L-homocysteine + 5-(2-methoxy-2-oxoethyl)uridine(34) in tRNA
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188384 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alkylated DNA repair protein alkB homolog 8 Chain: A
Molecule details ›
Chain: A
Length: 114 amino acids
Theoretical weight: 12.27 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q96BT7 (Residues: 25-125; Coverage: 15%)
Gene names: ABH8, ALKBH8
Sequence domains:
Structure domains: Alpha-Beta Plaits

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics, restrainted molecular dynamics
Expression system: Not provided

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