› 2dg4

X-ray diffraction
1.7Å resolution

FK506-binding protein mutant WF59 complexed with Rapamycin

Released:
DOI: 10.2210/pdb2dg4/pdb
PDB entry 2dg4 coloured by chain, front view.
PDB entry 2dg4 coloured by chain, side view.
PDB entry 2dg4 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Energetic and structural analysis of the role of tryptophan 59 in FKBP12.
Fulton KF, Jackson SE, Buckle AM
Biochemistry 42 2364-72 (2003)
PMID: 12600203

Function and Biology Details

Reaction catalysed: 
Peptidylproline (omega=180) = peptidylproline (omega=0)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-158812 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidyl-prolyl cis-trans isomerase FKBP1A Chain: A
Molecule details ›
Chain: A
Length: 107 amino acids
Theoretical weight: 11.8 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P62942 (Residues: 2-108; Coverage: 99%)
Gene names: FKBP1, FKBP12, FKBP1A
Sequence domains: FKBP-type peptidyl-prolyl cis-trans isomerase
Structure domains: Chitinase A; domain 3

Ligands and Environments

2 bound ligands:
Ligand RAP 1 x RAP
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ELLIOTT GX-13
Spacegroup: P212121
Unit cell:
a: 44.486Å b: 49.097Å c: 51.74Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.195 0.214
Expression system: Escherichia coli BL21

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Citations

3 review citations

Peptidyl-Proline Isomerases (PPIases): Targets for Natural Products and Natural Product-Inspired Compounds.
Dunyak et al. (2016)
2 more