› 2dwk

X-ray diffraction
2Å resolution

Crystal structure of the RUN domain of mouse Rap2 interacting protein x

Released:
DOI: 10.2210/pdb2dwk/pdb
PDB entry 2dwk coloured by chain, front view.
PDB entry 2dwk coloured by chain, side view.
PDB entry 2dwk coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Crystal structure of the RUN domain of the RAP2-interacting protein x.
Kukimoto-Niino M, Takagi T, Akasaka R, Murayama K, Uchikubo-Kamo T, Terada T, Inoue M, Watanabe S, Tanaka A, Hayashizaki Y, Kigawa T, Shirouzu M, Yokoyama S
J Biol Chem 281 31843-53 (2006)
PMID: 16928684

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190050 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein RUFY3 Chain: A
Molecule details ›
Chain: A
Length: 180 amino acids
Theoretical weight: 20.25 KDa
Source organism: Mus musculus
Expression system: Cell free synthesis
UniProt:
  • Canonical: Q9D394 (Residues: 65-237; Coverage: 37%)
Gene names: D5Bwg0860e, Ripx, Rufy3
Sequence domains: RUN domain
Structure domains: Methane Monooxygenase Hydroxylase; Chain G, domain 1

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B1
Spacegroup: P6422
Unit cell:
a: 86.523Å b: 86.523Å c: 106.582Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.205 0.205 0.231
Expression system: Cell free synthesis

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Citations

5 review citations

Establishment of axon-dendrite polarity in developing neurons.
Barnes et al. (2009)
4 more

1 mention without citation

An exit cavity was crucial to the polymerase activity of the early ribosome.
Fox et al. (2012)