› 2gh8

X-ray diffraction
3.2Å resolution

X-ray structure of a native calicivirus

Released:
DOI: 10.2210/pdb2gh8/pdb
PDB entry 2gh8 coloured by chain, front view.
PDB entry 2gh8 coloured by chain, side view.
PDB entry 2gh8 coloured by chain, top view.
Source organism: San Miguel sea lion virus 4
Primary publication:
X-ray structure of a native calicivirus: structural insights into antigenic diversity and host specificity.
Chen R, Neill JD, Estes MK, Prasad BV
Proc Natl Acad Sci U S A 103 8048-53 (2006)
PMID: 16702551

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153165 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Mature capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 558 amino acids
Theoretical weight: 61.64 KDa
Source organism: San Miguel sea lion virus 4
UniProt:
  • Canonical: P36285 (Residues: 153-320, 321-703; Coverage: 78%)
Gene name: ORF2
Sequence domains: Calicivirus coat protein
Structure domains: Jelly Rolls

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: I23
Unit cell:
a: 457.553Å b: 457.553Å c: 457.553Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.249 0.249 0.26

Quick links

Citations

16 review citations

Noroviruses everywhere: has something changed?
Estes et al. (2006)
15 more

24 mentions without citation

Biological and immunological characteristics of hepatitis E virus-like particles based on the crystal structure.
Yamashita et al. (2009)
23 more