2h6o

X-ray diffraction
3.5Å resolution

Epstein Barr Virus Major Envelope Glycoprotein

Released:
Source organism: Human gammaherpesvirus 4
Primary publication:
Structure of the Epstein-Barr virus major envelope glycoprotein.
Nat Struct Mol Biol 13 996-1001 (2006)
PMID: 17072314

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-193019 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (15 distinct):
Major outer envelope glycoprotein gp350 Chain: A
Molecule details ›
Chain: A
Length: 470 amino acids
Theoretical weight: 50.47 KDa
Source organism: Human gammaherpesvirus 4
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9QP87 (Residues: 1-470; Coverage: 53%)
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, MAN, BMA
Carbohydrate polymer : NEW Components: NAG, MAN, BMA
Carbohydrate polymer : NEW Components: NAG, MAN, NDG
Carbohydrate polymer : NEW Components: NAG, MAN, BMA
Carbohydrate polymer : NEW Components: NAG, MAN, GAL
Carbohydrate polymer : NEW Components: NAG, MAN, GAL
Carbohydrate polymer : NEW Components: NAG, MAN, BMA, GAL
Carbohydrate polymer : NEW Components: NAG, MAN
Carbohydrate polymer : NEW Components: NAG, MAN
Carbohydrate polymer : NEW Components: NAG, MAN, BMA
Carbohydrate polymer : NEW Components: NAG, MAN, NDG, FUC
Carbohydrate polymer : NEW Components: NAG, MAN, BMA, NDG, FUC
Carbohydrate polymer : NEW Components: NAG, MAN
Carbohydrate polymer : NEW Components: NAG
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P3221
Unit cell:
a: 110.009Å b: 110.009Å c: 146.129Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.338 0.326 0.368
Expression system: Spodoptera frugiperda