2h7f

X-ray diffraction
2.7Å resolution

Structure of variola topoisomerase covalently bound to DNA

Released:
Source organism: Variola virus
Primary publication:
Structural basis for specificity in the poxvirus topoisomerase.
Mol Cell 23 343-54 (2006)
PMID: 16885024

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-115326 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
DNA topoisomerase 1 Chain: X
Molecule details ›
Chain: X
Length: 314 amino acids
Theoretical weight: 36.7 KDa
Source organism: Variola virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P32989 (Residues: 1-314; Coverage: 100%)
Gene names: H6R, I6R, OPG111, TOP1
Sequence domains:
Structure domains:
5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3' Chain: Y
Molecule details ›
Chain: Y
Length: 11 nucleotides
Theoretical weight: 3.29 KDa
Source organism: Variola virus
Expression system: Not provided
5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3' Chain: Z
Molecule details ›
Chain: Z
Length: 14 nucleotides
Theoretical weight: 4.34 KDa
Source organism: Variola virus
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: C2221
Unit cell:
a: 68.523Å b: 138.232Å c: 113.079Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 0.191 0.237
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided