› 2ja4

X-ray diffraction
2.21Å resolution

Crystal structure of CD5 domain III reveals the fold of a group B scavenger cysteine-rich receptor

Released:
DOI: 10.2210/pdb2ja4/pdb
PDB entry 2ja4 coloured by chain, front view.
PDB entry 2ja4 coloured by chain, side view.
PDB entry 2ja4 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of the third extracellular domain of CD5 reveals the fold of a group B scavenger cysteine-rich receptor domain.
Rodamilans B, Muñoz IG, Bragado-Nilsson E, Sarrias MR, Padilla O, Blanco FJ, Lozano F, Montoya G
J Biol Chem 282 12669-77 (2007)
PMID: 17322294

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-138876 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
T-cell surface glycoprotein CD5 Chain: A
Molecule details ›
Chain: A
Length: 101 amino acids
Theoretical weight: 11.32 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P06127 (Residues: 269-369; Coverage: 21%)
Gene names: CD5, LEU1
Structure domains: SRCR-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P3221
Unit cell:
a: 62.931Å b: 62.931Å c: 72.564Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.193 0.248
Expression system: Homo sapiens

Quick links

Citations

5 review citations

Scavenger receptors in homeostasis and immunity.
Canton et al. (2013)
4 more

5 mentions without citation

Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.
Liu et al. (2013)
4 more