› 2jq8

Solution NMR

Solution structure of the Somatomedin B domain from vitronectin produced in Pichia pastoris

Released:
DOI: 10.2210/pdb2jq8/pdb
PDB entry 2jq8 coloured by chain, ensemble of 20 models, front view.
PDB entry 2jq8 coloured by chain, ensemble of 20 models, side view.
PDB entry 2jq8 coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Primary publication:
Solution structure of recombinant somatomedin B domain from vitronectin produced in Pichia pastoris.
Kjaergaard M, Gårdsvoll H, Hirschberg D, Nielbo S, Mayasundari A, Peterson CB, Jansson A, Jørgensen TJ, Poulsen FM, Ploug M
Protein Sci 16 1934-45 (2007)
PMID: 17766387

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137317 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Somatomedin-B Chain: A
Molecule details ›
Chain: A
Length: 53 amino acids
Theoretical weight: 6.17 KDa
Source organism: Homo sapiens
Expression system: Komagataella pastoris
UniProt:
  • Canonical: P04004 (Residues: 20-66; Coverage: 10%)
Gene name: VTN
Sequence domains: Somatomedin B domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: molecular dynamics
Expression system: Komagataella pastoris

Quick links

Citations

3 review citations

Serine proteases, inhibitors and receptors in renal fibrosis.
Eddy AA. (2009)
2 more

5 mentions without citation

Protein-protein docking benchmark version 4.0.
Hwang et al. (2010)
4 more