› 2js9

Solution NMR

Structure of caenopore-5 (81 Pro cis conformer)

Released:
DOI: 10.2210/pdb2js9/pdb
PDB entry 2js9 coloured by chain, ensemble of 15 models, front view.
PDB entry 2js9 coloured by chain, ensemble of 15 models, side view.
PDB entry 2js9 coloured by chain, ensemble of 15 models, top view.
Source organism: Caenorhabditis elegans
Primary publication:
Caenopore-5: the three-dimensional structure of an antimicrobial protein from Caenorhabditis elegans.
Mysliwy J, Dingley AJ, Stanisak M, Jung S, Lorenzen I, Roeder T, Leippe M, Grötzinger J
Dev Comp Immunol 34 323-30 (2010)
PMID: 19917307

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183129 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Saposin B-type domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 99 amino acids
Theoretical weight: 11.01 KDa
Source organism: Caenorhabditis elegans
Expression system: Escherichia coli
UniProt:
  • Canonical: Q86FL8 (Residues: 23-103; Coverage: 95%)
Gene names: CELE_T08A9.9, T08A9.9, spp-5
Sequence domains: Saposin-like type B, region 2
Structure domains: Saposin-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

5 review citations

Antimicrobial effectors in the nematode Caenorhabditis elegans: an outgroup to the Arthropoda.
Dierking et al. (2016)
4 more

5 mentions without citation

Worms' Antimicrobial Peptides.
Bruno et al. (2019)
4 more