› 2kkd

Solution NMR

NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin

Released:
DOI: 10.2210/pdb2kkd/pdb
PDB entry 2kkd coloured by chain, ensemble of 15 models, front view.
PDB entry 2kkd coloured by chain, ensemble of 15 models, side view.
PDB entry 2kkd coloured by chain, ensemble of 15 models, top view.
Source organism: Desulfovibrio vulgaris str. Hildenborough
Primary publication:
An NMR structural study of nickel-substituted rubredoxin.
Goodfellow BJ, Duarte IC, Macedo AL, Volkman BF, Nunes SG, Moura I, Markley JL, Moura JJ
J Biol Inorg Chem 15 409-20 (2010)
PMID: 19997764

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132362 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Rubredoxin Chain: A
Molecule details ›
Chain: A
Length: 52 amino acids
Theoretical weight: 5.58 KDa
Source organism: Desulfovibrio vulgaris str. Hildenborough
Expression system: Escherichia coli
UniProt:
  • Canonical: P00269 (Residues: 1-52; Coverage: 100%)
Gene names: DVU_3184, rub
Sequence domains: Rubredoxin
Structure domains: Rubrerythrin, domain 2

Ligands and Environments

1 bound ligand:
Ligand NI 1 x NI
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Escherichia coli

Quick links

Citations

1 review citation

The NMR contribution to protein-protein networking in Fe-S protein maturation.
Banci et al. (2018)
5 other articles

1 mention without citation

An NMR structural study of nickel-substituted rubredoxin.
Goodfellow et al. (2010)