› 2vf1

X-ray diffraction
3.4Å resolution

X-ray crystallographic structure of the picobirnavirus capsid

Released:
DOI: 10.2210/pdb2vf1/pdb
PDB entry 2vf1 coloured by chain, front view.
PDB entry 2vf1 coloured by chain, side view.
PDB entry 2vf1 coloured by chain, top view.
Source organism: Rabbit picobirnavirus
Primary publication:
The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry.
Duquerroy S, Da Costa B, Henry C, Vigouroux A, Libersou S, Lepault J, Navaza J, Delmas B, Rey FA
EMBO J. 28 1655-65 (2009)
PMID: 19407816

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 120-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192966 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 525 amino acids
Theoretical weight: 58.45 KDa
Source organism: Rabbit picobirnavirus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9Q1V2 (Residues: 66-590; Coverage: 89%)
Sequence domains: Picobirnavirus, Capsid protein
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P3221
Unit cell:
a: 407.424Å b: 407.424Å c: 808.628Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.273 0.273 0.272
Expression system: Spodoptera frugiperda

Quick links

Citations

11 review citations

Structure unifies the viral universe.
Abrescia et al. (2012)
10 more

10 mentions without citation

Capsid Structure of dsRNA Fungal Viruses.
Luque et al. (2018)
9 more