› 2xmr

X-ray diffraction
2Å resolution

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor

Released:
DOI: 10.2210/pdb2xmr/pdb
PDB entry 2xmr coloured by chain, front view.
PDB entry 2xmr coloured by chain, side view.
PDB entry 2xmr coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structure of the human N-Myc downstream-regulated gene 2 protein provides insight into its role as a tumor suppressor.
Hwang J, Kim Y, Kang HB, Jaroszewski L, Deacon AM, Lee H, Choi WC, Kim KJ, Kim CH, Kang BS, Lee JO, Oh TK, Kim JW, Wilson IA, Kim MH
J Biol Chem 286 12450-60 (2011)
PMID: 21247902

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-193984 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein NDRG2 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 281 amino acids
Theoretical weight: 31.22 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UN36 (Residues: 38-318; Coverage: 76%)
Gene names: KIAA1248, NDRG2, SYLD
Sequence domains: Ndr family
Structure domains: alpha/beta hydrolase

Ligands and Environments

3 bound ligands:
Ligand CA 1 x CA
Ligand ACT 3 x ACT
Ligand GOL 3 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 6C1
Spacegroup: P212121
Unit cell:
a: 86.232Å b: 88.049Å c: 126.907Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.183 0.18 0.232
Expression system: Escherichia coli

Quick links

Citations

7 review citations

New lives for old: evolution of pseudoenzyme function illustrated by iRhoms.
Adrain et al. (2012)
6 more

3 mentions without citation

Crystal structure of the human N-Myc downstream-regulated gene 2 protein provides insight into its role as a tumor suppressor.
Hwang et al. (2011)
2 more