› 331d

X-ray diffraction
1.65Å resolution

CRYSTAL STRUCTURE OF D(GCGCGCG) WITH 5'-OVERHANG G'S

Released:
DOI: 10.2210/pdb331d/pdb
PDB entry 331d coloured by chain, front view.
PDB entry 331d coloured by chain, side view.
PDB entry 331d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structure of d(GCGCGCG) with 5'-overhang G residues.
Pan B, Ban C, Wahl MC, Sundaralingam M
Biophys J 73 1553-61 (1997)
PMID: 9284322

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116004 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 7 nucleotides
Theoretical weight: 2.14 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 2 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P212121
Unit cell:
a: 20.41Å b: 29.65Å c: 51.86Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.184 not available
Expression system: Not provided

Quick links

Citations

5 citation in other articles

Intermolecular CH···O/N H-bonds in the biologically important pairs of natural nucleobases: a thorough quantum-chemical study.
Brovarets' et al. (2014)
4 more

3 mentions without citation

Structure and Formation of Z-DNA and Z-RNA.
Krall et al. (2023)
2 more