› 362d

X-ray diffraction
1.3Å resolution

THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS

Released:
DOI: 10.2210/pdb362d/pdb
PDB entry 362d coloured by chain, front view.
PDB entry 362d coloured by chain, side view.
PDB entry 362d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of d(TGCGCA)2 and a comparison to other DNA hexamers.
Harper A, Brannigan JA, Buck M, Hewitt L, Lewis RJ, Moore MH, Schneider B
Acta Crystallogr D Biol Crystallogr 54 1273-84 (1998)
PMID: 10089504

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116025 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand NCO 2 x NCO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SRS BEAMLINE PX9.6
Spacegroup: P212121
Unit cell:
a: 21.162Å b: 28.67Å c: 44.335Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.12 not available 0.173
Expression system: Not provided

Quick links

Citations

7 citation in other articles

Hydration of the phosphate group in double-helical DNA.
Schneider et al. (1998)
6 more

4 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
3 more